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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198469254_198470070_R

Intron Information:

Intron Rank:
142048
Intron Class:
major
Intron Phase:
Intron Coordinates:
198469254 - 198470070
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.2
87
30
Major BPS
100
1.24
0.5
100
0
Major PPT
80.1
0.68
0.8
78
30.8
Minor 5ss
32.8
-2
2.7
42.5
44.3
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023751
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032845
198452474 - 198470844
18371