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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198524101_198524369_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
198524101 - 198524369
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGGG
5'SS Class:
major
3'SS Sequence:
TTACGTTTCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTTATTTTAACA
Flanking Amino Acid:
DEIRTLKQQKIDEAFEREQA
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
60.8
44.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
73.6
0.53
0.9
69.2
36.6
Minor 5ss
33.4
-1.9
3.2
36.7
41.6
Minor BPS
71.7
0.68
1.2
76.38
34.4

Associated Gene:

Gene:
THAP12
Ensembl Gene ID:
ENSAPLG00000010379
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010808
198522033 - 198527219
5187