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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198524407_198525386_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
198524407 - 198525386
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
SRHRKRIKELSEDEIRTLKQ
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.1
0.72
1
87.2
30.4
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
THAP12
Ensembl Gene ID:
ENSAPLG00000010379
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010808
198522033 - 198527219
5187