About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198525495_198527098_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
198525495 - 198527098
Intron Length:
1604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TGTCTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
ATTTCCTAAAGG
Flanking Amino Acid:
MICRSSPYRTVLRDN
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
72.3
34.3
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
81.4
0.71
0.8
75.9
32.7
Minor 5ss
31.6
-2.1
2.7
34
41.5
Minor BPS
60
0.17
2
69.5
43.9

Associated Gene:

Gene:
THAP12
Ensembl Gene ID:
ENSAPLG00000010379
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010808
198522033 - 198527219
5187