About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198553392_198556863_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
198553392 - 198556863
Intron Length:
3472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
TCTAATTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTGCTCTAATT
Flanking Amino Acid:
DECKRILRKLELEAYAGVIS
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.1
56.3
39.4
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
76.1
0.59
0.9
73.2
36.7
Minor 5ss
33.9
-1.8
3.5
37.2
47.4
Minor BPS
64.4
0.53
1.7
84.17
37.2

Associated Gene:

Gene:
EMSY
Ensembl Gene ID:
ENSAPLG00000010078
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010520
198553283 - 198590768
37486
ENSAPLT00000046884
198553283 - 198590462
37180
ENSAPLT00000042443
198553283 - 198590768
37486
ENSAPLT00000038239
198553283 - 198590768
37486