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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198556964_198557583_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
198556964 - 198557583
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATCCTG
5'SS Class:
major
3'SS Sequence:
TTCTTTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TTCTTTTTAACA
Flanking Amino Acid:
DLLGELSKVLSISTERHRAE
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
65.5
45.9
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
86.6
0.82
0.8
84.3
29.1
Minor 5ss
41.6
-0.9
3.1
56.4
47.8
Minor BPS
79.4
0.92
1
82.25
33.1

Associated Gene:

Gene:
EMSY
Ensembl Gene ID:
ENSAPLG00000010078
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042443
198553283 - 198590768
37486
ENSAPLT00000038239
198553283 - 198590768
37486
ENSAPLT00000010520
198553283 - 198590768
37486
ENSAPLT00000046884
198553283 - 198590462
37180