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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198557659_198559913_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
198557659 - 198559913
Intron Length:
2255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
GAATACTTAAAG
Flanking Amino Acid:
NDERLTTIAHNMSGPNSSSE
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
74.8
0.56
0.9
73.6
36.6
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
55
0.02
1.7
57.43
42.8

Associated Gene:

Gene:
EMSY
Ensembl Gene ID:
ENSAPLG00000010078
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038239
198553283 - 198590768
37486
ENSAPLT00000017648
198553283 - 198590462
37180
ENSAPLT00000010520
198553283 - 198590768
37486
ENSAPLT00000046884
198553283 - 198590462
37180
ENSAPLT00000042443
198553283 - 198590768
37486