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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198560090_198561204_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
198560090 - 198561204
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTATAT
U12 Branch Point Sequence:
CTTCAGTTATAT
Flanking Amino Acid:
PVPAETGNKEVVVCYSYTST
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
61.5
0.29
1.3
61
45.5
Major PPT
86.9
0.83
0.6
84.9
22.7
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
42
-0.5
2.4
63.65
46

Associated Gene:

Gene:
EMSY
Ensembl Gene ID:
ENSAPLG00000010078
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042443
198553283 - 198590768
37486
ENSAPLT00000017648
198553283 - 198590462
37180
ENSAPLT00000010520
198553283 - 198590768
37486
ENSAPLT00000046884
198553283 - 198590462
37180