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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198560090_198564650_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
198560090 - 198564650
Intron Length:
4561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TATAATTTAGCA
Flanking Amino Acid:
PVPAETGNKEGVSCSDDDEK
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
79
0.72
1
78.4
31.2
Major PPT
82.5
0.73
0.8
73.6
36.3
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
52.4
0.07
1.8
66.62
39.3

Associated Gene:

Gene:
EMSY
Ensembl Gene ID:
ENSAPLG00000010078
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038239
198553283 - 198590768
37486