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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198564911_198569405_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
198564911 - 198569405
Intron Length:
4495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
AACAAATGAATT
Flanking Amino Acid:
TQTTNTTTQKVIIVTTSPSS
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
68.8
42.3
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
91
0.92
0.6
89
20
Minor 5ss
38.2
-1.3
3.1
49.2
47.1
Minor BPS
43.3
-0.4
1.8
56.01
39.5

Associated Gene:

Gene:
EMSY
Ensembl Gene ID:
ENSAPLG00000010078
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010520
198553283 - 198590768
37486
ENSAPLT00000046884
198553283 - 198590462
37180
ENSAPLT00000042443
198553283 - 198590768
37486
ENSAPLT00000038239
198553283 - 198590768
37486
ENSAPLT00000017648
198553283 - 198590462
37180