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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198569683_198571609_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
198569683 - 198571609
Intron Length:
1927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCAG
5'SS Class:
major
3'SS Sequence:
TACTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TCAATCTTAAAC
Flanking Amino Acid:
PSVVMSTVAQGVSTSAIKVA
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
62.2
43.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
85.2
0.79
0.8
79.6
32
Minor 5ss
36.2
-1.6
3.2
46.2
49.1
Minor BPS
60.9
0.32
1.5
64.98
40.2

Associated Gene:

Gene:
EMSY
Ensembl Gene ID:
ENSAPLG00000010078
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038239
198553283 - 198590768
37486
ENSAPLT00000017648
198553283 - 198590462
37180
ENSAPLT00000010520
198553283 - 198590768
37486
ENSAPLT00000046884
198553283 - 198590462
37180
ENSAPLT00000042443
198553283 - 198590768
37486