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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198571919_198574045_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
198571919 - 198574045
Intron Length:
2127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTTGGA
5'SS Class:
major
3'SS Sequence:
TCTCCTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTATTTTAACA
Flanking Amino Acid:
KPTIQIKQESGVKIITQQVQ
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
65.2
41
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79
0.65
0.7
72.6
32.1
Minor 5ss
30.7
-2.2
3.4
40.9
45.3
Minor BPS
71.7
0.68
1.2
76.38
34.4

Associated Gene:

Gene:
EMSY
Ensembl Gene ID:
ENSAPLG00000010078
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038239
198553283 - 198590768
37486
ENSAPLT00000017648
198553283 - 198590462
37180
ENSAPLT00000010520
198553283 - 198590768
37486
ENSAPLT00000046884
198553283 - 198590462
37180