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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198574196_198575728_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
198574196 - 198575728
Intron Length:
1533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TATATTCTAACA
Flanking Amino Acid:
MTTKLVTTPTGTQATYTRPT
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
70.3
0.46
0.9
66.2
33.5
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
56.9
0.21
1.7
69.7
36.1

Associated Gene:

Gene:
EMSY
Ensembl Gene ID:
ENSAPLG00000010078
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017648
198553283 - 198590462
37180
ENSAPLT00000010520
198553283 - 198590768
37486
ENSAPLT00000046884
198553283 - 198590462
37180
ENSAPLT00000038239
198553283 - 198590768
37486