Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198575903_198577954_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

198575903 - 198577954

Intron Length:

2052

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGCATA

5'SS Class:

major

3'SS Sequence:

CTTTAAAATTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

TTCCCTTTAAAA

Flanking Amino Acid:

GKIISSNIVSGTTTKITTIP

Intron Amino Acid Position:

582

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

1.1

70.7

41.3

Major BPS

73.1

0.58

79.6

29.1

Major PPT

60.1

0.23

1.2

62.6

41.4

Minor 5ss

41.7

-0.9

3.2

53.5

45.8

Minor BPS

68.3

0.57

1.4

73.99

37.5

Associated Gene:

Gene:

EMSY

Ensembl Gene ID:

ENSAPLG00000010078

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042443

198553283 - 198590768

37486

ENSAPLT00000038239

198553283 - 198590768

37486

ENSAPLT00000017648

198553283 - 198590462

37180

ENSAPLT00000010520

198553283 - 198590768

37486

ENSAPLT00000046884

198553283 - 198590462

37180