Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198578092_198579589_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

198578092 - 198579589

Intron Length:

1498

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

GGCTTCTCTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

ACTCAGTTAACC

Flanking Amino Acid:

NVVTTLLNAGGEKTIQAVPA

Intron Amino Acid Position:

628

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

83.2

30.8

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

0.58

0.9

68.7

37.4

Minor 5ss

34.6

-1.8

2.7

41.5

Minor BPS

48.9

-0.1

2.2

63.29

41.9

Associated Gene:

Gene:

EMSY

Ensembl Gene ID:

ENSAPLG00000010078

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038239

198553283 - 198590768

37486

ENSAPLT00000017648

198553283 - 198590462

37180

ENSAPLT00000010520

198553283 - 198590768

37486

ENSAPLT00000042443

198553283 - 198590768

37486