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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198578092_198580690_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
198578092 - 198580690
Intron Length:
2599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTGACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TCTTTCTGACTA
Flanking Amino Acid:
NVVTTLLNAGVLIKPKPVTF
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
69.2
0.48
1
61
37.1
Major PPT
71.2
0.48
1
66.8
39.3
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
54.7
0.14
1.7
67.18
40

Associated Gene:

Gene:
EMSY
Ensembl Gene ID:
ENSAPLG00000010078
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046884
198553283 - 198590462
37180