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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198585436_198586828_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
198585436 - 198586828
Intron Length:
1393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGTACCC
5'SS Class:
weak_major
3'SS Sequence:
TCTTCTTCCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTCTCTTTACTA
Flanking Amino Acid:
TGAITHIMQQALSSHTAFTK
Intron Amino Acid Position:
912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.4
0.15
1.3
48.3
40.5
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
74
0.54
1
79.1
26.9
Minor 5ss
28.3
-2.5
3
35.6
40.5
Minor BPS
66.4
0.51
1.6
74.34
38.4

Associated Gene:

Gene:
EMSY
Ensembl Gene ID:
ENSAPLG00000010078
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042443
198553283 - 198590768
37486
ENSAPLT00000038239
198553283 - 198590768
37486
ENSAPLT00000017648
198553283 - 198590462
37180
ENSAPLT00000010520
198553283 - 198590768
37486
ENSAPLT00000046884
198553283 - 198590462
37180