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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198668517_198670280_R

Intron Information:

Intron Rank:
133876
Intron Class:
major
Intron Phase:
Intron Coordinates:
198668517 - 198670280
Intron Length:
1764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTGC
5'SS Class:
major
3'SS Sequence:
ATTGTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CATGGTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
67.7
38.4
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
85.6
0.8
0.8
77.4
41.2
Minor 5ss
46.7
-0.3
2.5
62.1
42.5
Minor BPS
42.7
-0.4
2.3
59.68
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019285
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043369
198666666 - 198671523
4858
ENSAPLT00000023068
198668038 - 198671523
3486