Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198679411_198683980_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

198679411 - 198683980

Intron Length:

4570

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGATG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTCTGGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAA

U12 Branch Point Sequence:

AAGTGATGATCC

Flanking Amino Acid:

RPAEGMPCEMTNLQAFCHNK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

75.2

40.6

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

82.8

0.74

0.9

80.6

31.4

Minor 5ss

-1.6

3.3

45.6

43.8

Minor BPS

39.7

-0.8

2.1

48.24

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009988

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010395

198677437 - 198684071

6635