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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198732421_198732699_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
198732421 - 198732699
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
GTTATCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTGTGTTATCA
Flanking Amino Acid:
MLPPSVAEALKTG
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
75.7
40.1
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
78.6
0.64
0.9
74.6
39.8
Minor 5ss
40.2
-1.1
2.8
57.6
39.6
Minor BPS
48.9
-0
2.3
70.18
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009760
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010180
198726308 - 198741243
14936