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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198732864_198734664_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
198732864 - 198734664
Intron Length:
1801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TCCAGTTTGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
73.7
32.5
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
85.5
0.8
0.8
77.1
41.6
Minor 5ss
25.2
-2.9
3.2
30.3
43.5
Minor BPS
48
-0
1.8
62.56
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009760
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010180
198726308 - 198741243
14936