Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198737269_198738672_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

198737269 - 198738672

Intron Length:

1404

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

GATTTTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

ATGCCCTTGATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

77.2

32.8

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

87.1

0.84

0.8

84.8

35.4

Minor 5ss

32.6

-2

3.4

44.1

43.8

Minor BPS

70.2

0.72

1.2

78.82

37.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009760

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010180

198726308 - 198741243

14936