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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198739951_198740929_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
198739951 - 198740929
Intron Length:
979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAACA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TCTCCTGTGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
36
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
83
0.74
0.9
80.5
37
Minor 5ss
32.4
-2
3.1
40.9
45.1
Minor BPS
49.8
0.07
2
71.69
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009760
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010180
198726308 - 198741243
14936