About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19881876_19894290_F

Intron Information:

Intron Rank:
140431
Intron Class:
major
Intron Phase:
Intron Coordinates:
19881876 - 19894290
Intron Length:
12415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTTGGCA
5'SS Class:
major
3'SS Sequence:
TCTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1
57.3
35.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
87.8
0.85
0.7
83.3
25.1
Minor 5ss
30.2
-2.3
3.4
38.8
46.4
Minor BPS
69.2
0.6
1.7
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024759
19881820 - 19895437
13618