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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198833904_198836279_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
198833904 - 198836279
Intron Length:
2376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCCTAATA
Flanking Amino Acid:
APGWEPTPAPRKEHPVLSPQ
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.1
33.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.1
0.7
0.8
78.5
28.9
Minor 5ss
32.3
-2
3.3
44.3
43.6
Minor BPS
71.9
0.68
1.6
83.62
30.2

Associated Gene:

Gene:
TSKU
Ensembl Gene ID:
ENSAPLG00000001790
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001784
198833170 - 198846309
13140