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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198836363_198845243_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
198836363 - 198845243
Intron Length:
8881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AGGCAATTAAAT
Flanking Amino Acid:
TPARDGAGKRRSTMQFTAWF
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
66.5
39.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
85
0.79
0.8
77
37.3
Minor 5ss
26.6
-2.7
3.1
33.5
41.9
Minor BPS
46.1
-0.2
1.8
61
41.4

Associated Gene:

Gene:
TSKU
Ensembl Gene ID:
ENSAPLG00000001790
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001784
198833170 - 198846309
13140