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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198931283_198932666_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
198931283 - 198932666
Intron Length:
1384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATGCATCAAATT
Flanking Amino Acid:
GLGSYLHILLSLYTRTLFLK
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
85.8
0.8
0.6
84.9
22.8
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
41.3
-0.5
1.9
57.21
39.7

Associated Gene:

Gene:
ACER3
Ensembl Gene ID:
ENSAPLG00000009659
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046711
198887440 - 198932784
45345
ENSAPLT00000010057
198887440 - 198932992
45553