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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198932713_198932938_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
198932713 - 198932938
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
LFLKHRPKVKFLFGIWPVLL
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
ACER3
Ensembl Gene ID:
ENSAPLG00000009659
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010057
198887440 - 198932992
45553