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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19894431_19895159_F

Intron Information:

Intron Rank:
140432
Intron Class:
major
Intron Phase:
Intron Coordinates:
19894431 - 19895159
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TACCTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
AATGCTATACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
1
88.2
26.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
82
0.72
0.8
76.8
31.5
Minor 5ss
33.8
-1.9
2.6
42.8
44.1
Minor BPS
47.9
-0
1.9
68.2
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025567
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024759
19881820 - 19895437
13618