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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198960430_198971925_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
198960430 - 198971925
Intron Length:
11496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
ATTTCCTCATTT
Flanking Amino Acid:
IQGIQWKRPKEICDDPRLFV
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
85.5
0.8
0.7
80.6
24.7
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
63.6
0.51
1.8
82.82
38.6

Associated Gene:

Gene:
CAPN5
Ensembl Gene ID:
ENSAPLG00000009147
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009554
198960268 - 198990320
30053