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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198982475_198983360_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
198982475 - 198983360
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
CTTGCCCTCACA
Flanking Amino Acid:
EREWNGPWSDTSEEWQKVSK
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.3
63.1
43.4
Major BPS
76.8
0.67
1
66
40.9
Major PPT
78.6
0.64
0.7
72.6
25.7
Minor 5ss
28
-2.5
3
30.4
36.1
Minor BPS
49.3
-0
2.2
67.55
44.9

Associated Gene:

Gene:
CAPN5
Ensembl Gene ID:
ENSAPLG00000009147
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009554
198960268 - 198990320
30053