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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198983439_198984197_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
198983439 - 198984197
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CCTTTCTGACTT
Flanking Amino Acid:
GMTVEDDGEFWMTFEDFCKY
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
70.4
0.46
0.9
69.8
35.6
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
50.4
0.09
1.8
67.49
44.2

Associated Gene:

Gene:
CAPN5
Ensembl Gene ID:
ENSAPLG00000009147
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009554
198960268 - 198990320
30053