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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198984394_198985211_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
198984394 - 198985211
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCTTCCTCACCT
Flanking Amino Acid:
HKNTFLQNPQYVFDVKKAED
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.8
33.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
85.3
0.79
0.8
76.9
37.3
Minor 5ss
32.2
-2
3
41.4
39.1
Minor BPS
58.5
0.35
1.9
75.75
46.8

Associated Gene:

Gene:
CAPN5
Ensembl Gene ID:
ENSAPLG00000009147
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009554
198960268 - 198990320
30053