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Intron Name: Anas_platyrhynchos_platyrhynchos_1_198986514_198988913_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

198986514 - 198988913

Intron Length:

2400

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATGGCC

5'SS Class:

major

3'SS Sequence:

TTTCTCTCACCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAA

U12 Branch Point Sequence:

TTTTCTCTCACC

Flanking Amino Acid:

AGLRNQDSQGGADPYVIIKC

Intron Amino Acid Position:

536

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

69.1

37.5

Major BPS

70.8

0.52

70.6

31.6

Major PPT

80.7

0.69

0.8

74.8

34.8

Minor 5ss

30.6

-2.2

3.5

42.3

44.6

Minor BPS

59.8

0.29

2.1

78.9

36.8

Associated Gene:

Gene:

CAPN5

Ensembl Gene ID:

ENSAPLG00000009147

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009554

198960268 - 198990320

30053