Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_198989051_198989137_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

198989051 - 198989137

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCAGCA

5'SS Class:

major

3'SS Sequence:

CTTTTTTCTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTCAA

U12 Branch Point Sequence:

CCTCCCTTACCT

Flanking Amino Acid:

KKPGQPIIVQIWNHNLISDE

Intron Amino Acid Position:

582

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.3

0.41

1.2

59.8

39.5

Major BPS

60.8

0.27

1.1

63.2

34.1

Major PPT

87.3

0.84

0.6

81.3

30.8

Minor 5ss

35.2

-1.7

3.5

48.6

Minor BPS

64.4

0.53

1.7

77.02

45.4

Associated Gene:

Gene:

CAPN5

Ensembl Gene ID:

ENSAPLG00000009147

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009554

198960268 - 198990320

30053