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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199033902_199033990_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
199033902 - 199033990
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACGAT
U12 Branch Point Sequence:
GGTCACCGAGCT
Flanking Amino Acid:
LLEKSRVCRQAQDERNYHVF
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
54.2
0.11
1.3
52.8
42.7
Major PPT
81.1
0.7
0.7
73.4
31.6
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
40.6
-0.6
2
58.84
42.8

Associated Gene:

Gene:
MYO7A
Ensembl Gene ID:
ENSAPLG00000007675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018705
199020520 - 199062284
41765
ENSAPLT00000008029
199020520 - 199078756
58237