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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199065252_199065646_F

Intron Information:

Intron Rank:
29
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
199065252 - 199065646
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTGCCCTGACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TGTGCCCTGACT
Flanking Amino Acid:
FSLYIALFDKVSSLGSGNDH
Intron Amino Acid Position:
1318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
79.2
0.72
1
75
40
Major PPT
54.8
0.11
1
47.8
40.4
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
61.8
0.45
1.8
81.11
40.4

Associated Gene:

Gene:
MYO7A
Ensembl Gene ID:
ENSAPLG00000007675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008029
199020520 - 199078756
58237