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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199069119_199069231_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
199069119 - 199069231
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTG
Flanking Amino Acid:
VVTLQDNPNPVGEESGFLSF
Intron Amino Acid Position:
1598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
70.6
41.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.9
0.83
0.8
81.8
34.6
Minor 5ss
33.7
-1.9
2.9
38.1
40.9
Minor BPS
56.8
0.08
1.6
61.91
41.3

Associated Gene:

Gene:
MYO7A
Ensembl Gene ID:
ENSAPLG00000007675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008029
199020520 - 199078756
58237