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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199069423_199070006_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
199069423 - 199070006
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTATGTGACA
Flanking Amino Acid:
TVTMPPLEIVALVTMTPDQR
Intron Amino Acid Position:
1662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
100
1.24
0.5
100
0
Major PPT
79
0.65
0.8
73
31.6
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
49
-0
2.2
67.92
38.4

Associated Gene:

Gene:
MYO7A
Ensembl Gene ID:
ENSAPLG00000007675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008029
199020520 - 199078756
58237