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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199070132_199070964_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
199070132 - 199070964
Intron Length:
833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGATTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTCCTTTTACT
Flanking Amino Acid:
TLEEFSYDYFRPPPKHTLSR
Intron Amino Acid Position:
1703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
85.8
25.2
Major BPS
74.2
0.6
1
67
39.4
Major PPT
72.3
0.5
0.9
70.5
35
Minor 5ss
40.8
-1
3
58.4
46.2
Minor BPS
72.7
0.8
1.6
89.79
34

Associated Gene:

Gene:
MYO7A
Ensembl Gene ID:
ENSAPLG00000007675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008029
199020520 - 199078756
58237