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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199072382_199072556_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
199072382 - 199072556
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GTCTCCTCATTT
Flanking Amino Acid:
TLKQLTDNHIKYSEEKGWEL
Intron Amino Acid Position:
1801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.1
31.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
75.4
0.57
0.8
74.1
29.9
Minor 5ss
36.7
-1.5
3.5
51
39.9
Minor BPS
55.3
0.25
1.8
72.89
44.2

Associated Gene:

Gene:
MYO7A
Ensembl Gene ID:
ENSAPLG00000007675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008029
199020520 - 199078756
58237