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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199073019_199073833_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
199073019 - 199073833
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTTCTATGT
Flanking Amino Acid:
KVYFPDDTDEAFEVESSTKA
Intron Amino Acid Position:
1889

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
84.2
0.77
0.7
80.4
25
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
48.1
-0
2.1
75.57
41.7

Associated Gene:

Gene:
MYO7A
Ensembl Gene ID:
ENSAPLG00000007675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008029
199020520 - 199078756
58237