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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199076124_199076846_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
199076124 - 199076846
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAAACGG
5'SS Class:
major
3'SS Sequence:
CTCTCTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGCAA
U12 Branch Point Sequence:
AAACCCTCCAGC
Flanking Amino Acid:
RQLSPDDWKRSIVAYYNKHA
Intron Amino Acid Position:
2054

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.1
50.6
46.1
Major BPS
49.7
-0
1.3
61.4
36.2
Major PPT
81.2
0.7
0.8
75.8
32.7
Minor 5ss
30.3
-2.3
3.1
30.6
42.7
Minor BPS
41.8
-0.6
2.1
48.98
40.4

Associated Gene:

Gene:
MYO7A
Ensembl Gene ID:
ENSAPLG00000007675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008029
199020520 - 199078756
58237