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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199077773_199078063_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
199077773 - 199078063
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTGAGTTTGAGT
Flanking Amino Acid:
GVSLIDPKTKDILITHPFTK
Intron Amino Acid Position:
2121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
68.2
0.41
1
60.2
41.5
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
46.8
-0.1
2.1
66.99
44.5

Associated Gene:

Gene:
MYO7A
Ensembl Gene ID:
ENSAPLG00000007675
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008029
199020520 - 199078756
58237