About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199082615_199083444_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
199082615 - 199083444
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTGCCCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
GTGGCCTGATCC
Flanking Amino Acid:
LLISLIFALHWWRERSFSCC
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
70
0.45
1
65.8
35.9
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
48.9
-0.1
1.9
59.95
44.9

Associated Gene:

Gene:
GDPD4
Ensembl Gene ID:
ENSAPLG00000007426
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007729
199082021 - 199092120
10100