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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199083528_199084523_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
199083528 - 199084523
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TGGTGTTGAATA
Flanking Amino Acid:
KNLSQPLFLMTPQQYNIMWI
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
82.8
0.74
0.8
74.1
36.6
Minor 5ss
41.2
-1
2.9
54.6
44.5
Minor BPS
49
-0
1.9
60.44
40.2

Associated Gene:

Gene:
GDPD4
Ensembl Gene ID:
ENSAPLG00000007426
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007729
199082021 - 199092120
10100