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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199105466_199108870_R

Intron Information:

Intron Rank:
144263
Intron Class:
major
Intron Phase:
Intron Coordinates:
199105466 - 199108870
Intron Length:
3405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
66.5
0.37
1.1
63.9
41.9
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
64.7
0.54
1.6
83.29
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024876
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046709
199104329 - 199109045
4717