About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199137073_199138942_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
199137073 - 199138942
Intron Length:
1870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TCATTTATAACT
Flanking Amino Acid:
SSSQKYMSFTDKLAEDYNSS
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
1
71.4
40
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
83.6
0.76
0.8
80.7
31.3
Minor 5ss
32
-2.1
3.3
44
43.8
Minor BPS
62.1
0.46
1.6
77
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028244
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032053
199136999 - 199175494
38496