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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_199145894_199159926_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
199145894 - 199159926
Intron Length:
14033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTACT
5'SS Class:
major
3'SS Sequence:
TTCCTTCTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CACTTCTTATGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
79
34.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79.3
0.66
0.7
73
31.9
Minor 5ss
44.5
-0.6
2.5
61.4
42.8
Minor BPS
49
0
1.9
63.84
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028244
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032053
199136999 - 199175494
38496