About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_19921303_19929601_R

Intron Information:

Intron Rank:
138859
Intron Class:
major
Intron Phase:
Intron Coordinates:
19921303 - 19929601
Intron Length:
8299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
GGCGTCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
86.5
0.82
0.9
84.9
29.9
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
43.7
-0.4
1.7
53.45
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022201
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046801
19916980 - 19934835
17856